classical MLST analysis¶

A workflow analysis of classical MLST is performed using a series of Python scripts described below.

All avalaible commands can be listed using help fonction:

claMLST --help

Usage: claMLST [OPTIONS] COMMAND [ARGS]...

Classical MLST commands.

Commands:
create   Creates a classical MLST DATABASE from a SCHEME csv and ALLELES...
import   Creates a claMLST DATABASE from an online resource.
info     Output the informations about a classical MLST DATABASE
remove   Removes ALLELE sequence from the GENE on a mlst DATABASE.
search   Searches ST number for an assembly GENOME using an mlst DATABASE.
search2  Searches ST number from FASTQS(.gz) raw reads using an mlst...